Bioinformatics / Computational Biology

1. Textbooks


Michael S. Waterman
Introduction to Computational Biology: Maps, Sequences and Genomes
Chapman & Hall--CRC Press. 1995 ISBN 0 412 99391

R. Durbin, S. Eddy, A. Krogh, and G. Mitchison.
Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids
Cambridge University Press, 1998. ISBN: 0521629713

Pierre Baldi, Soren Brunak,
Bioinformatics : The Machine Learning Approach (Adaptive Computation and Machine Learning)
2nd Edition, MIT Press, 2001

Dan Gusfield.
Algorithms on Strings, Trees, and Sequences : Computer Science and Computational Biology
Cambridge Univ. Press, 1997. ISBN: 0521585198

J. C. Setubal and J. Meidanis,
Introduction to Computional Molecular Biology
PWS Publishing Company, 1997.

Pavel A. Pevzner
Computational Molecular Biology : An Algorithmic Approach
MIT Press, 2000.

P. Clote and R. Backofen,
Comptuational Molecular Biology: An Introduction
Wiley, 2000

Neil Jones and Pavel Pevzner
An Introduction go Bioinformatics Algorithms
MIT Press, 2004

N. Cristianini and M.W. Hahn
Introduction to computational genomics : a case studies approach
Cambridge University Press, 2007

A. Polanski, M. Kimmel
Bioinformatics
Springer, 2007

R.C. Deonier, S. Tavare, M.S. Waterman
Computational genome analysis
Springer, 2007

Wing-Kin Sung
Algorithms in Bioinformatics: A practical introduction
CRC Press, 2010

Richard E. Neapolitan
Probabilistic Methods for Bioinformatics with an Introduction to Bayesian Networks
Morgan Kaufman, 2009

Enno Ohlebusch
Bioinformatics Algorithms, Sequence Analysis, Genome Rearrangements, and Phylogenetic Reconstruction
2009

Pavel Pevzner and Ron Shamir
Bioinformatics for Biologists
Nobel Akademik Yayincilik, 2014

Jeremy Ramsden
Bioinformatics, An Introducion
Springer, 2015

K.Erciyes
Distributed and Sequential Algorithms for Bioinformatics
Springer, 2015

Pavel A. Pevzner and Phillip Compeau
Distributed and Sequential Algorithms for Bioinformatics
Active Learning Publishers, 2014

Pavel A. Pevzner
Computational Molecular Biology, An Algorithmic Approach
MIT Press, 2000

Veli M?kinen, Fabio Cunial, Djamal Belazzougui and Alexandru I. Tomescu
Genome-Scale Algorithm Design: Biological Sequence Analysis in the Era of High-Throughput Sequencing
Cambridge University Press, 2015

2. Edited Books and Collections

Sankoff, D. and Kruskal, J.B.  (eds.)
Time Warps, String Edits, and Macromolecules: The Theory and Practice of Sequence Comparison.
Addison-Wesley, London 1983

Waterman M.S. (Ed.)
Mathematical methods for DNA sequences.
CRC Press, Boca Raton (1989). ISBN: 084936664X

Andreas Baxevanis and B.F. Francis Ouellette, Eds.
Bioinformatics : A Practical Guide to the Analysis of Genes and Proteins
Wiley, 1998. ISBN: 047119196
Stephen Misener, Stephen A. Krawetz (eds.)
Bioinformatics Methods and Protocols (Methods in Molecular Biology, Vol 132)
Humana Pr, 1999; ISBN: 0896037320

Hooman H. Rashidi, Lukas K. Buehler
Bioinformatics Basics: Applications in the Biological Science and Medicine
CRC Press, 1999; ISBN: 0849323754

M.J. Bishop and C.J. Rawlings (Eds)
DNA and Protein Sequence Analysis : A Practical Approach
IRL Press at Oxford University Press, 1997; ISBN: 0199634637
Steven Salzberg, David Searls, and Simon Kasif (eds)
Computational Methods in Molecular Biology
ElseviEr Science, 1999 ISBN: 0444502041

3. Programming and Informatics

Letovsky, Stanley, Ed.
Bioinformatics: Databases and Systems
Kluwer Academic: Boston, 1999.; ISBN: 079238573X
 
Randal L. Schwartz, Tom Christiansen, and Larry Wall.

Learning Perl
O'Reilly and Associates, 1997.

Larry Wall, Randal L. Schwartz, Tom Christiansen, and Stephen Potter.
Programming Perl
O'Reilly and Associates, 1996.

4. Molecular biology

Bruce Alberts, Dennis Bray, Julian Lewis, Martin Raff, Keith Roberts, James Watson.
Molecular Biology of the Cell
Garland, 1995.
Benjamin Lewin, Paul Siliciano, Martin Klotz.
Genes VI
Oxford, 1997.

5. Gene Expression and DNA chips

J. Hoheisel (editor)
Chip Technology
Springer, 2002 
G. Parmigiani et. al (editors)
The Analysis of Gene Expression Data
Springer, 2003

D. Stekel
Microarray Bioinformatics
Cambridge University Press, 2003.
S. M. Lin
Methods of Microarray Data Analysis (vol 1-2)
Kluwer, 2002

P. Baldi and G. W. Hatfield
DNA Microarrays and Gene Expression
Cambridge, 2002.

T. Speed (editor)
Statistical Analysis of Gene Expression Microarray Data
Chapman and Hall/CRC, 2003


Other lists of bioinformatics books

Expasy's list of bioinformatics books
ISCB list of bioinformatics books
Expasy's list of bioinformatics books