Instructor: Roded
Sharan
Time: Monday 13-16
The syllabus for the course is here
Following is a tentative outline of the course, which will be updated according to what is actually studied in class:
|
Week |
Date |
Lecture
scribes |
Read more (refs. are
below) |
|
1 |
20 Mar |
Molecular biology of the cell, Alberts et al. |
|
|
2 |
27 Mar |
Reviews/Tutorials |
|
|
3 |
17
Apr |
Protein-protein
interaction networks : data processing & functional annotation |
|
|
4 |
24 Apr |
Integer linear programming |
|
|
5 |
1 May |
||
|
6 |
8 May |
More
on Network modules |
* |
|
7 |
15 May |
||
|
8 |
22 May |
||
|
9 |
29 May |
* |
|
|
10 |
5 Jun |
Network
orientation and signing |
|
|
11 |
12 Jun |
Boolean network modeling |
|
|
12 |
19 Jun |
||
|
13 |
26 Jun |
Project presentations |
Reviews/tutorials
on Biological Networks
1. A.-L. Barabsi and Z.N. Oltvai. Network biology: understanding the cell's functional organization. Nat. Rev. Genet. 5:101-113, 2004.
2.
M.E.J. Newman. The structure and function of
complex networks.
3. R. Albert and A.-L. Barabasi. Statistical mechanics of complex networks. Rev. Modern Phys. 74:47-97, 2002.