Tel Aviv University School of Computer Science

Fall 2000-2001
Algorithms in Molecular Biology

0368.4020.01

Ron Shamir

Mondays 16-19 Shenkar 222

Some of the material is obsolete. The current course website is available here
Contact Info:

Email Phone Office Office Hours

Instructor: Ron Shamir rshamir 640-5383 Schreiber 014 Thu 5-6

TA: Itsik Pe'er izik 640-5394 Schreiber 011 Wed. 3-4

		Email	Phone	Office	Office Hours
Instructor:	Ron Shamir	rshamir	640-5383	Schreiber 014	Thu 5-6
TA:	Itsik Pe'er	izik	640-5394	Schreiber 011	Wed. 3-4

Class B-board: (Last update: Mon Jan 15 14:17)

Course Outline:

Note: If you have a choice, we recommend that you use the ps files. The other file formats may miss certain figures and distort some formulas.

Lect Date Topic Notes (shaded=draft) Speaker Scribe

1 30/10 Introductory Concepts ps ps.gz html Ron Shamir Rotem Sorek Eran Goldberg

2 6/11 Pairwise alignment ps ps.gz html Ron Shamir Alexander Feldman Ofira Grebenchuk

3 13/11 Sequence Alignment Heuristics ps ps.gz html Ron Shamir Jakov Kostjukovsky Alexander Shevchenko

4 20/11 Multiple Sequence Alignment ps ps.gz html Ron Shamir Elery Pfeffer Orit Kilper

5 27/11 Bioinformatics Tools ps ps.gz html Racheli Zakarin Guy Kol Naomi Yehuda

6 4/12 Hidden Markov Models ps ps.gz html Ron Shamir Ophir Gvirtser Zohar Ganon

7 11/12 Gene Finding ps ps.gz html Ron Shamir Gil Shklarsky Michal Ozery-Flato

8 18/12 Phylogeny ps ps.gz html Ron Shamir Yuval Inbar Tzvika Hartman

9 25/12 Physical Mapping ps ps.gz html Ron Shamir Guy Erez Ofer Rahat

10 1/1 Genome Rearrangements ps ps.gz html Ron Shamir Yaniv Nahum Sonny Ben Shimon

11 8/1 DNA Chips ps ps.gz html Ron Shamir Ronny Morad Tal Moran

12 15/1 DNA Chips II ps ps.gz html Ron Shamir Shachar Ofek Elena Zotenko

13 22/1 Protein Structure ps ps.gz html Haim wolfson Aviad Tsherniak Dina Duhovny

14 29/1 Genetic Networks ps ps.gz html Ron Shamir Vladimir Koushnir Igor Bogudlov

Lect	Date	Topic	Notes (shaded=draft)	Speaker	Scribe
1	30/10	Introductory Concepts	ps	ps.gz	html	Ron Shamir	Rotem Sorek Eran Goldberg
2	6/11	Pairwise alignment	ps	ps.gz	html	Ron Shamir	Alexander Feldman Ofira Grebenchuk
3	13/11	Sequence Alignment Heuristics	ps	ps.gz	html	Ron Shamir	Jakov Kostjukovsky Alexander Shevchenko
4	20/11	Multiple Sequence Alignment	ps	ps.gz	html	Ron Shamir	Elery Pfeffer Orit Kilper
5	27/11	Bioinformatics Tools	ps	ps.gz	html	Racheli Zakarin	Guy Kol Naomi Yehuda
6	4/12	Hidden Markov Models	ps	ps.gz	html	Ron Shamir	Ophir Gvirtser Zohar Ganon
7	11/12	Gene Finding	ps	ps.gz	html	Ron Shamir	Gil Shklarsky Michal Ozery-Flato
8	18/12	Phylogeny	ps	ps.gz	html	Ron Shamir	Yuval Inbar Tzvika Hartman
9	25/12	Physical Mapping	ps	ps.gz	html	Ron Shamir	Guy Erez Ofer Rahat
10	1/1	Genome Rearrangements	ps	ps.gz	html	Ron Shamir	Yaniv Nahum Sonny Ben Shimon
11	8/1	DNA Chips	ps	ps.gz	html	Ron Shamir	Ronny Morad Tal Moran
12	15/1	DNA Chips II	ps	ps.gz	html	Ron Shamir	Shachar Ofek Elena Zotenko
13	22/1	Protein Structure	ps	ps.gz	html	Haim wolfson	Aviad Tsherniak Dina Duhovny
14	29/1	Genetic Networks	ps	ps.gz	html	Ron Shamir	Vladimir Koushnir Igor Bogudlov

Handouts

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