Michael S. Waterman
Introduction to Computational Biology: Maps, Sequences and Genomes
Chapman & Hall--CRC Press. 1995 ISBN 0 412 99391
R. Durbin, S. Eddy, A. Krogh, and G. Mitchison.
Biological Sequence Analysis: Probabilistic Models of Proteins and
Nucleic Acids
Cambridge University Press, 1998. ISBN: 0521629713
Pierre Baldi, Soren Brunak,
Bioinformatics : The Machine Learning Approach (Adaptive Computation and
Machine Learning)
2nd Edition, MIT Press, 2001
Dan Gusfield.
Algorithms on Strings, Trees, and Sequences : Computer Science and Computational
Biology
Cambridge Univ. Press, 1997. ISBN: 0521585198
J. C. Setubal and J. Meidanis,
Introduction to Computional Molecular Biology
PWS Publishing Company, 1997.
Pavel A. Pevzner
Computational Molecular Biology : An Algorithmic Approach
MIT Press, 2000.
P. Clote and R. Backofen,
Comptuational Molecular Biology: An Introduction
Wiley, 2000
2. Edited Books and Collections
Sankoff, D. and Kruskal, J.B. (eds.)
Time Warps, String Edits, and Macromolecules: The Theory and Practice
of Sequence Comparison.
Addison-Wesley, London 1983
Waterman M.S. (Ed.)
Mathematical methods for DNA sequences.
CRC Press, Boca Raton (1989). ISBN: 084936664X
Hooman H. Rashidi, Lukas K. Buehler
Bioinformatics Basics: Applications in the Biological Science and Medicine
CRC Press, 1999; ISBN: 0849323754
Larry Wall, Randal L. Schwartz, Tom Christiansen, and Stephen Potter.
Programming Perl
O'Reilly and Associates, 1996.