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SPIKE user’s manual
Bird's eye view
SPIKE allows a "Bird's eye" view of the pathway map, which can be very useful if you have
a large, spread out map. This function is activated by pressing (
) from the menu.
Filtering
The SPIKE Database contains data at diverse quality levels - from carefully curated data,
through data imported en masse from public databases (KEGG, Reactome) to highly noisy
data obtained from high-throughput protein interaction screens. Data items in SPIKE
database are assigned confidence levels according to their quality. The filtering option
allows selection of certain data only according to quality and other criteria.
To configure the filter choose "Filter Configuration" from the View option in the menu:
The parameters for the filtering are:
Private data - whether you want to view your private
data on the map
Draft data - whether you want to view data which was
not curated yet
Minimal confidence - will not show data whose
confidence level is below the chosen value
Sites - will show data only from the chosen sites
Data sources - will show data only from the chosen
data sources
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