Molecular Docking Algorithm Based on Shape Complementarity Principles
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Type PDB codes of receptor and ligand molecules or upload files in PDB format
Receptor Molecule: (PDB:chainId e.g. 2kai:AB) or upload file:
Ligand Molecule: (PDB:chainId e.g. 2kai:I) or upload file:
e-mail address: (the results are sent to this address)
Clustering RMSD:
Complex Type: Be sure to give receptor and ligand in the corresponding order!

Advanced Options:
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Receptor Binding Site: upload receptor binding site file
Ligand Binding Site: upload ligand binding site file
Distance Constraints: upload distance constraints file
FireDock - Fast Interaction Refinement in Molecular Docking
SymmDock - An Algorithm for Prediction of Complexes with Cn Symmetry
Beta 1.3 Version, Contact: duhovka@gmail.com
If you use this program, please cite:

1. Duhovny D, Nussinov R, Wolfson HJ. Efficient Unbound Docking of Rigid Molecules. In Gusfield et al., Ed. Proceedings of the 2'nd Workshop on Algorithms in Bioinformatics(WABI) Rome, Italy, Lecture Notes in Computer Science 2452, pp. 185-200, Springer Verlag, 2002 [ PDF file ]
2. Schneidman-Duhovny D, Inbar Y, Nussinov R, Wolfson HJ. PatchDock and SymmDock: servers for rigid and symmetric docking. Nucl. Acids. Res. 33: W363-367, 2005. [ Full text ]