Next: Analyzing Gene Expression Data
Up: cDNA Clustering
Previous: Clustering Real cDNA Data
- 1.
- Finding a faster implementation of the min-cut algorithm (for
example [10]).
- 2.
- Improving the algorithm by attempting to find maximal highly connected
subgraphs (see e.g. [13]) with a minimal complexity damage.
- 3.
- Trying different similarity scoring schemes.
- 4.
- Trying different objective functions.
- 5.
- Finding ways for measuring the quality of a solution
when the true clustering is unknown.
- 6.
- Using cluster fingerprint to find database matches.
- 7.
- Use the HCS clustering in other contexts.
Peer Itsik
2001-01-31