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The FastA Software Package
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Specificity and Sensitivity of
Main Algorithms for Database Searching
There are three main search tools: FastA, BLAST and SW-search.
The FastA Software Package
Variants of FastA
Sketch of the FastA Algorithm (see also lecture No. 3)
Programs in the FastA3 Package
Which Program When?
FastA Output
Tips for FastA Results
BLAST - Basic Local Alignment Search Tool
Variants of BLAST
General View of How the BLAST Program Works (see also lecture No. 3):
BLAST Output
The Smith-Waterman Tool
Comparison of the Programs
Tips for DB Searches
Itshack Pe`er
1999-01-17
