| date | speaker | Topic | |
| 1 | 9/3 | Ron Shamir | Introduction |
| 2 | 16/3 | Yonit Halperin | basic concepts: Stormo's review, Consensus, Prima |
| 3 | 23/3 | Alisa Pasakhis | AlignACE, Gapped Motifs (Rocke-Tompa) |
| 4 | 30/3 | Danit Widder | MEME and EM |
| 6/4 | none | no class (RECOMB) | |
| 13/4 | none | Passover | |
| 20/4 | none | Passover | |
| 5 | 27/4 | Shahar Karin | WINNOWER, SP-STAR |
| 6 | 28/4 (makeup) | Meni Livne | WEEDER and Suffix Trees |
| 7 | 4/5 | Maria Gozman | PROJECTION (Buhler-Tompa) |
| 8 | 11/5 | Nataly Kotz | MULTIPROFILER (Keich-Pevzner) |
| 9 | 18/5 | Tzachi Yitzhaki | FootPrinter |
| 10 | 25/5 | Eran Shoval | OrthoMEME, EMnEM |
| 11 | 26/5 (makeup) | Osher Cohen | PhyME |
| 1/6 | none | Shavuot | |
| 12 | 8/6 | Roee Engel | Gibbs and PhyloGibbs |
| 13 | 15/6 | Roy Navon | HYDEN |