mRNA Translation in Chloroplasts - Source Code and Data

This following code was developed and used in the following paper:

Carmel Ezra S., Tuller T., Modeling the effect of rRNA-mRNA interactions and mRNA folding on mRNA translation in chloroplasts. To appear in Computational and Structural Biotechnology Journal. 2022.

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Data:

Chloroplasts data organization codes directory - contains the MATLAB code for organizing the raw chloroplasts' data into a data tables containing all the relevant information for the analysis.

Chloroplasts tables directory - contains the chloroplasts' data tables with the relevant information for the analysis.

Source code:

Energy based model - ETIP directory - contains the MATLAB code for conducting the ETIP model.

Gene banks chloroplasts directory - contains the chloroplasts' raw data gene banks files downloaded from NCBI.

Groups structures directory - contains the MATLAB code for conducting the functional structures of the chloroplasts' orthologous groups.

Orthologous groups directory - contains the MATLAB code for conducting the chloroplasts' orthologous groups.