Next:
Preface: Phylogenetics and Phylogenetic
Preface: Phylogenetics and Phylogenetic Trees
What is Phylogenetics?
Phylogenetic Trees
A Simple Solution?
Parsimony
Small Parsimony
Weighted Parsimony
Weighted Characters
Large Parsimony
Branch and Bound
Nearest Neighbor Interchange
Compatibility
Compatibility and Parsimony
Pairwise Compatibility
Finding the Tree
Constructing the Phylogeny
Distance Matrix Methods
Pairwise Distances
Distance between Proteins - PAM matrices
Distance between DNA Sequences - Jukes-Cantor Model
Least Squares Methods
UPGMA
Neighbor Joining
Maximum Likelihood
Computing the Likelihood of a Tree
Finding the Optimal Branch Lengths
Bibliography
About this document ...
Itshack Pe`er
1999-02-18