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SPIKE user’s manual
Table of Contents
Introduction
1
1. Overview
3
2. Exploring pathways
4
Creating a new pathway
4
Handling nodes
5
Expanding Pathways
6
Saving and Opening pathways
8
Export to an image file
8
3. Analysi
s utilities
9
Superposition of gene expression data
9
Coloring Gene Clusters
11
Path Finding
11
Intra
-
connection among proteins in input target sets
12
4. Additional display features
13
Hidden components
13
Manual layout and alignment
13
Bird's eye view
14
Filtering
14
5. Editing the data
15
Creating New Regulations
15
Editing and Deleting Regulations
17
Creating, Editing and Deleting Complexes and Families
17
6. Getting synchronized with other research labs
21
Acknowledgements
22
Appendix A
-
File Formats
23
Appendix B
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Spike Default System Users
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